mNGS of virus culture cell line - SRA

SRX24141295: mNGS of virus culture cell line
1 ILLUMINA (Illumina NovaSeq 6000) run: 6.7M spots, 1.7G bases, 540Mb downloads

Design: Nextera-flex

Submitted by: University of Washington

Study: mNGS of 10 filovirus strains

mNGS result to identify the strain of 10 stock filoviruses

Sample: stock strain identification

Library:

Name: Ema2

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: VIRAL RNA

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 6.7M spots, 1.7G bases, 540Mb

Run	# of Spots	# of Bases	Size	Published
SRR28541272	6,733,112	1.7G	540Mb	2024-04-10

Supplemental Content

Mus musculus GTP-binding protein 8 (putative) (Gtpbp8), transcript variant 2, mR...
Mus musculus GTP-binding protein 8 (putative) (Gtpbp8), transcript variant 2, mRNA
gi|226693390|ref|NM_001159329.1|

Nucleotide
[125I]2-Iodo-N-[(S)-{(S)-1-methylpiperidin-2-yl}(phenyl)methyl]3-trifluoromethyl...
[125I]2-Iodo-N-[(S)-{(S)-1-methylpiperidin-2-yl}(phenyl)methyl]3-trifluoromethyl-benzamide - Molecular Imaging and Contrast Agent Database (MICAD)
Gastric Fistula
Gastric Fistula
Abnormal passage communicating with the STOMACH.<br/>

MeSH
Toll-Like Receptor 7
Toll-Like Receptor 7
A pattern recognition receptor that binds several forms of imidazo-quinoline including the antiviral compound Imiquimod.<br/>Year introduced: 2006(2005)

MeSH

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SRA